SNP Profiles matching MOQ 6/95

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 Key

 1234567891011121314
_Input profile
TTCCCCGGCCGGACCCAGCCGGGGAACC
1._EET_272_[ECU]
__CCGGCC__CCAGCC__AA_
2._GC-03-032-3-11
TTCCCCGGCCGG_CCAGCCGGGGAACC
3._EET_272_[ECU]
__CCGGCC_AACCAGCC__AA_
4._PA_150_[PER]
__CCGGCC_AACCAGCC__AA_
5._PA_150_[PER]
__CCGGCC_AACCAGCC__AA_
6._PA_150_[PER]
__CCGGCC_AACCAGCC__AA_
7._PA_150_[PER]
__CCGGCC_AACCAGCC__AA_
8._EQX_/O_[CHA]
__CCGGCC_CCCCAGCC__AA_
9._GC-03-032-3-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
10._GC-01-034-2-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
11._GC-01-034-2-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
12._GC-01-034-2-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
13._GC-01-034-2-11
TTCCCCGGCCGGAACCAGCCGGGGAACC
14._GC-07-077-4-21
TTCCCCGGCCGGCCCCAGCCGGGGAACC
15._RUQ_32
__CCGGCC_ACCCAGCC__AA_
16._PA_56_[PER]
__CCGGCC_ACCCAGCC__AA_
17._PA_128_[PER]
__ACGGCC_AC-AGCC__AA_
18._RUQ_32
TTCCCCGGCCGGACCCAGCCGGGGAACC
19._PA_56_[PER]
__CCGGCC_AACCAGCC__AA_
20._PA_56_[PER]
__CCGGCC_AACCAGCC__AA_
21._PA_56_[PER]
__CCGGCC_AACCAGCC__AA_
22._PA_56_[PER]
__CCGGCC_AACCAGCC__AA_
23._RUQ_1119
TTCCCCGGCTGGCCCCGGCCGGGGAACC
24._PA_56_[PER]
__CCGGCC_AACCAGCC____
25._NA
TTCCCCGGCCGGAACCAGCCGGGGAACC
26._NA
TTCCCCGGCCGGAACCAGCCGGGGAACC
27._NA
TTCCCCGGCCGGAACCAGCCGGGGAACC
28._NA
TTCCCCGGCCGGAACCAGCCGGGGAACC
29._RUQ_1576
TTCCACGGCCGGCCCCGGCCGGGGAACC
30._RUQ_1642
TTCCACGGCCGGCCCCGGCCGGGGAACC
31._RUQ_1642
TTCCACGGCCGGCCCCGGCCGGGGAACC
32._NA
TTCCCCGGCCGGAACCAGCCGGGG_CC
 1516171819202122232425262728
_Input profile
AAACCCGTCGCCCTTTTTGGAGTTAAGG
1._EET_272_[ECU]
AAACCCGTCGCC_TT_GG___GG
2._GC-03-032-3-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
3._EET_272_[ECU]
AAACCCGTCGCC_TT_GG___GG
4._PA_150_[PER]
AAACCCGTCGCC_TT_GG___GG
5._PA_150_[PER]
AAACCCGTCGCC_TT_GG___GG
6._PA_150_[PER]
AAACCCGTCGCC_TT_GG___GG
7._PA_150_[PER]
AAACCCGTCGCC_TT_GG___GG
8._EQX_/O_[CHA]
AAACCCGTCGCC_TT_GG___GG
9._GC-03-032-3-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
10._GC-01-034-2-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
11._GC-01-034-2-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
12._GC-01-034-2-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
13._GC-01-034-2-11
AAACCCGTCGCCCTTTCTGGAGTTAAGG
14._GC-07-077-4-21
AAACCCGTCGCCCCTTCTGGAGTTAAGG
15._RUQ_32
AAACCTGTCGCC_TT_GG___GG
16._PA_56_[PER]
AAACCTGTCGCC_TT_GG___GG
17._PA_128_[PER]
AAAACCGTCGCC_TT_-___GG
18._RUQ_32
AAACCTGTCGCCTTTTCTGGAGTTAAGG
19._PA_56_[PER]
AAACCTGTCGCC_TT_GG___GG
20._PA_56_[PER]
AAACCTGTCGCC_TT_GG___GG
21._PA_56_[PER]
AAACCTGTCGCC_TT_GG___GG
22._PA_56_[PER]
AAACCTGTCGCC_TT_GG___GG
23._RUQ_1119
AGACCTGTGGCCCTTTTTGGAGTTAAGG
24._PA_56_[PER]
AAACCTGTCGCC_TT_GG___GG
25._NA
AAACCTGTCGCCTTTTCCGGAGTTAAGG
26._NA
AAACCTGTCGCCTTTTCCGGAGTTAAGG
27._NA
AAACCTGTCGCCTTTTCCGGAGTTAAGG
28._NA
AAACCTGTCGCCTTTTCCGGAGTTAAGG
29._RUQ_1576
AAAACCGGCGCCTTTTCTGGAGTTAAGG
30._RUQ_1642
AAAACCGGCGCCTTTTCTGGAGTTAAGG
31._RUQ_1642
AAAACCGGCGCCTTTTCTGGAGTTAAGG
32._NA
AAACCTGTCGCCTTTTCCGGAGTTAAGG
 2930313233343536373839404142
_Input profile
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
1._EET_272_[ECU]
_CCAG_CC___TT__CCGGGG
2._GC-03-032-3-11
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
3._EET_272_[ECU]
_CCAG_CC___TT__CCGGGG
4._PA_150_[PER]
_CCAG_CC___TT__CCGGGG
5._PA_150_[PER]
_CCAG_CC___TT__CCGGGG
6._PA_150_[PER]
_CCAG_CC___TT__CCGGGG
7._PA_150_[PER]
_CCAG_CC___TT__CCGGGG
8._EQX_/O_[CHA]
_CC__CC___TT__CCGGGG
9._GC-03-032-3-11
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
10._GC-01-034-2-11
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
11._GC-01-034-2-11
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
12._GC-01-034-2-11
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
13._GC-01-034-2-11
CCCCAGCCCCGGGGTTTTTTCCCCGGGG
14._GC-07-077-4-21
CCCC_CCCCGGGGTTTTTTCCCCGGGG
15._RUQ_32
_CCAG_CC___TT__CTCGGG
16._PA_56_[PER]
_CCAG_CC___TT__CTCGGG
17._PA_128_[PER]
CCCCAG_CC___TT__CTGGGG
18._RUQ_32
CCCCAGCCCCGGGGTTTTCTCCCTCGGG
19._PA_56_[PER]
_CCAG_CC___TT__CTCGGG
20._PA_56_[PER]
_CCAG_CC___TT__CTCGGG
21._PA_56_[PER]
_CCAG_CC___TT__CTCGGG
22._PA_56_[PER]
_CCAG_CC___TT__CTCGGG
23._RUQ_1119
CCCCAGCCCCGGGGTTTTCTCCCCGGGG
24._PA_56_[PER]
_CCAG_CC___TT__CTCGGG
25._NA
CCCCAGCTCCGGGGTTTTTTCCCTCGGG
26._NA
CCCCAGCTCCGGGGTTTTTTCCCTCGGG
27._NA
CCCCAGCTCCGGGGTTTTTTCCCTCGGG
28._NA
CCCCAGCTCCGGGGTTTTTTCCCTCGGG
29._RUQ_1576
CCCCAGCCCCGGGGTTTTTTCCCCCGGG
30._RUQ_1642
CCCCAGCCCCGGGGTTTTTTCCCCCGGG
31._RUQ_1642
CCCCAGCCCCGGGGTTTTTTCCCCCGGG
32._NA
CCCCAGCTCCGGGGTTTTTTCCCTCGGG

Input profile: MOQ_6_/95 RUQ_1436

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._EET_272_[ECU]

identical
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 7
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

2._EET_272_[ECU] GC-03-032-3-11

98.8 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

3._EET_272_[ECU]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3311 8
 Dapeng Zhang, 2016

4._PA_150_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

5._PA_150_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

6._PA_150_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

7._PA_150_[PER]

97.9 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

8._EQX_/O_[CHA]

97.8 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 7421 2
 Dapeng Zhang, 2016

9._EET_272_[ECU] GC-03-032-3-11

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._PA_150_[PER] GC-01-034-2-11

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

11._PA_150_[PER] GC-01-034-2-11

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

12._PA_150_[PER] GC-01-034-2-11

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

13._PA_150_[PER] GC-01-034-2-11

97.6 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

14._EQX_/O_[CHA] GC-07-077-4-21

96.3 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

15._PA_56_[PER] RUQ_32

93.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._PA_56_[PER]

93.8 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 238
 Dapeng Zhang, 2016

17._PA_128_[PER]

93.5 %
23 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A D272 T2
 Dapeng Zhang, 2014

18._PA_56_[PER] RUQ_32

92.9 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

19._PA_56_[PER]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8176 2
 Dapeng Zhang, 2016

20._PA_56_[PER]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8176 3
 Dapeng Zhang, 2016

21._PA_56_[PER]

91.7 %
24 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8176 4
 Dapeng Zhang, 2016

22._PA_56_[PER]

91.7 %
24 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 8176 6
 Dapeng Zhang, 2016

23._PA_279_[PER] RUQ_1119

91.7 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

24._PA_56_[PER]

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8176 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

25._PA_56_[PER] NA

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

26._PA_56_[PER] NA

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

27._PA_56_[PER] NA

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

28._PA_56_[PER] NA

90.5 %
42 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

29._PA_124_[PER] RUQ_1576

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

30._PA_195_[PER] RUQ_1642

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

31._PA_195_[PER] RUQ_1642

90.5 %
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

32._PA_56_[PER] NA

90.2 %
41 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP998 32TcSNP999 33TcSNP1060 34TcSNP1063 35TcSNP1111
36TcSNP1126 37TcSNP1253 38TcSNP1309 39TcSNP1439 40TcSNP1442
41TcSNP1458 42TcSNP1484